FTIR detection of protonation/deprotonation of key carboxyl side chains caused by redox change of the Cu(A)-heme a moiety and ligand dissociation from the heme a3-Cu(B) center of bovine heart cytochrome c oxidase

FTIR spectral changes of bovine cytochrome c oxidase (CcO) upon ligand dissociation from heme a(3)() and redox change of the Cu(A)-heme a moiety (Cu(A)Fe(a)()) were investigated. In a photosteady state under CW laser illumination at 590 nm to carbonmonoxy CcO (CcO-CO), the C-O stretching bands due to Fe(a3)()(2+)CO and Cu(B)(1+)CO were identified at 1963 and 2063 cm(-)(1), respectively, for the fully reduced (FR) state [(Cu(A)Fe(a)())(3+)Fe(a3)()(2+)Cu(B)(1+)] and at 1965 and 2061 cm(-)(1) for the mixed valence (MV) state [(Cu(A)Fe(a)())(5+)Fe(a3)()(2+)Cu(B)(1+)] in H(2)O as well as in D(2)O. For the MV state, however, another band due to Cu(B)(1+)CO was found at 2040 cm(-)(1), which was distinct from the alpha/beta conformers in the spectral behaviors, and therefore was assigned to the (Cu(A)Fe(a)())(4+)Fe(a3)()(3+)Cu(B)(1+)CO generated by back electron transfer. The FR-minus-oxidized difference spectrum in the carboxyl stretching region provided two negative bands at 1749 and 1737 cm(-)(1) in H(2)O, which were apparently merged into a single band with a band center at 1741 cm(-)(1) in D(2)O. Comparison of these spectra with those of bacterial enzymes suggests that the 1749 and 1737 cm(-)(1) bands are due to COOH groups of Glu242 and Asp51, respectively. A similar difference spectrum of the carboxyl stretching region was also obtained between (Cu(A)Fe(a)())(3+)Fe(a3)()(2+)Cu(B)(1+)CO and (Cu(A)Fe(a)())(5+)Fe(a3)()(2+)Cu(B)(1+)CO. The results indicate that an oxidation state of the (Cu(A)Fe(a)()) moiety determines the carboxyl stretching spectra. On the other hand, CO-dissociated minus CO-bound difference spectra in the FR state gave rise to a positive and a negative peaks at 1749 and 1741 cm(-)(1), respectively, in H(2)O, but mainly a negative peak at 1735 cm(-)(1) in D(2)O. It was confirmed that the absence of a positive peak is not caused by slow deuteration of protein. The corresponding difference spectrum in the MV state showed a significantly weaker positive peak at 1749 cm(-)(1) and an intense negative peak at 1741 cm(-)(1) (1737 cm(-)(1) in D(2)O). The spectral difference between the FR and MV states is explained satisfactorily by the spectral change induced by the electron back flow upon CO dissociation as described above. Thus, the changes of carboxyl stretching bands induced both by oxidation of (Cu(A)Fe(a)()) and dissociation of CO appear at similar frequencies ( approximately 1749 cm(-)(1)) but are ascribed to different carboxyl side chains.     

Structure Determination of an AgI‐Mediated Cytosine–Cytosine Base Pair within DNA Duplex in Solution with 1H/15N/109Ag NMR Spectroscopy

The structure of an Ag^I‐mediated cytosine–cytosine base pair, C–Ag^I–C, was determined with NMR spectroscopy in solution. The observation of 1‐bond ¹⁵N‐¹⁰⁹Ag J‐coupling (¹J(¹⁵N,¹⁰⁹Ag): 83 and 84 Hz) recorded within the C–Ag^I–C base pair evidenced the N3–Ag^I–N3 linkage in C–Ag^I–C. The triplet resonances of the N4 atoms in C–Ag^I–C demonstrated that each exocyclic N4 atom exists as an amino group (?NH₂), and any isomerization and/or N4–Ag^I bonding can be excluded. The 3D structure of Ag^I–DNA complex determined with NOEs was classified as a B‐form conformation with a notable propeller twist of C–Ag^I–C (?18.3±3.0°). The ¹⁰⁹Ag NMR chemical shift of C‐Ag^I‐C was recorded for cytidine/Ag^I complex (δ(¹⁰⁹Ag): 442 ppm) to completed full NMR characterization of the metal linkage. The structural interpretation of NMR data with quantum mechanical calculations corroborated the structure of the C–Ag^I–C base pair.     

Effective PHIP Labeling of Bioactive Peptides Boosts the Intensity of the NMR Signal

A series of novel bioactive derivatives of the sunflower trypsin inhibitor‐1 (SFTI‐1) suitable for hyperpolarization by parahydrogen‐induced polarization (PHIP) was developed. The PHIP activity was achieved by labeling with L ‐propargylglycine, O‐propargyl‐L ‐tyrosine, or 4‐pentynoic acid. ¹H NMR signal enhancements (SE) of up to a factor of 70 were achieved in aqueous solution. We found that an isolated spatial location of the triple bond within the respective label and its accessibility for the hydrogenation catalyst are essential factors for the degree of signal enhancement.     

Molecular dynamics simulation of dissociation behavior of various crystalline celluloses treated with hot-compressed water

The dissociation behavior of the crystalline cellulose polymorphs I_β, II, III_I, and IV_I (Cell I_β, etc.) at 503 K and 100 bar was studied by molecular dynamics simulation, and the mechanism of the experimental liquefaction during treatment with hot-compressed water was elucidated. The results showed that the mini-crystals of Cell I_β and Cell IV_I exhibited similar resistance to dissociation, which implies the occurrence of crystal transformation from Cell IV_I to Cell I. On the other hand, the mini-crystal of Cell II gradually dissociated into the water environment with the progress of time in the simulation. The water molecules gradually penetrated the Cell II crystal, especially along the (1 \(\overline{1}\) 0) crystal plane. In contrast, the dissolution behavior differed for the surface and the core areas of the mini-crystal of Cell III_I. The cellulose chains on the surface were dissociated into the water environment, whereas the ordered structure of the chains in the core region was maintained for the entire simulation period. The detailed investigation showed that the core part of Cell III_I was transformed into Cell I at an early stage of the simulation: Cell I is resistant to dissociation of the structure even in the hot-compressed water environment. It can be confirmed that the stability of these four crystals under high temperature and pressure conditions follows the order: Cell II < III_I < IV_I ≈ I_β.     

Strategy for Molecular Design of Photochromic Diarylethenes Having Thermal Functionality

Thermal reactivities of photochromic diarylethene closed‐ring isomers can be controlled by the introduction of substituents at the reactive positions. Diarylethenes having bulky alkyl groups undergo thermal cycloreversion reactions. When bulky alkoxy groups are introduced, the diarylethenes have both thermal cycloreversion reactivities and low photocycloreversion quantum yields. Such photochromic compounds can be applied to thermally reusable photoresponsive‐image recordings. The thermal cycloreversion reactivity of the closed‐ring isomers can be evaluated using specific steric substituent constants and be correlated with the parameters. By introduction of trimethylsilyl or methoxymethyl groups at the reactive positions, the diarylethene closed‐ring isomers undergo thermal irreversible reactions to produce by‐products at high temperatures. These diarylethenes may be useful for secret‐image recordings. Furthermore, thiophene‐S,S‐dioxidized diarylethenes having secondary alkyl groups at the reactive positions undergo thermal by‐product formation reactions, in addition to the photostability of the colored closed‐ring isomers. Such materials may be used for light‐starting thermosensors. The thermal by‐product formation reactivity can be evaluated by the specific substituent constants and theoretical calculations of quantum chemistry. These results supply the strategy for the molecular design of the photochromic diarylethenes having thermal functionality.

     

Efficient Coupling Reaction of Quinone Monoacetal with Phenols Leading to Phenol Biaryls

A simple and efficient synthesis of phenol biaryls by the cross‐couplings of quinone monoacetals (QMAs) and phenols is reported. The Brønsted acid catalytic system in 1,1,1,3,3,3‐hexafluoro‐2‐propanol was found to be particularly efficient for this transformation. This reaction can be extended to the synthesis of various phenol biaryls, including sterically hindered biaryls, with yields ranging from 58 to 90 % under mild reaction conditions and in a highly regiospecific manner.     

Vacuum ultraviolet photodissociation and surface morphology change of water ice films dosed with hydrogen chloride

Time-of-flight (TOF) spectra of photofragment H atoms from the photodissociation of water ice films at 193 nm were measured for amorphous and polycrystalline water ice films with and without dosing of hydrogen chloride at 100-145 K. The TOF spectrum is sensitive to the surface morphology of the water ice film because the origin of the H atom is the photodissociation of dimerlike water molecules attached to the ice film surfaces. Adsorption of HCl on a polycrystalline ice film was found to induce formation of disorder regions on the ice film surface at 100-140 K, while the microstructure of the ice surface stayed of polycrystalline at 145 K with adsorption of HCl. The TOF spectra of photofragment Cl atoms from the 157 nm photodissociation of neutral HCl adsorbed on water ice films at 100-140 K were measured. These results suggest partial dissolution of HCl on the ice film surface at 100-140 K.     

Temperature dependence of activation volume on Cu content of ultra-low carbon steel

Abstract

The temperature dependence of the yield stress, effective stress and activation volume on the Cu content in steel was assessed using polycrystalline ultra-low carbon steels with 0.5, 1 and 2 mass% Cu added. A small hump was seen in the effective stress–temperature curve for ultra-low carbon steel, which has also been reported for high-purity single-crystal iron. The effective stress was found to decrease with increasing the Cu content. The activation volume was found to be linearly related to the temperature at low temperatures for all types of specimens considered. The activation volume was found to increase abruptly at a certain temperature, which increased with increasing the Cu content. The change in the relationship of the activation volume to temperature is discussed in this paper with respect to the thermally activated process of dislocation glide from the Peierls mechanism to the interaction between dislocations and solute Cu atoms.     

Synthesis, properties, and ambipolar organic field-effect transistor performances of symmetrically cyanated pentacene and naphthacene as air-stable acene derivatives

5,12-Dicyanonaphthacene and 6,13-dicyanopentacene have been synthesized for the first time. The LUMO and HOMO levels are deepened as predicted and fabricated organic field-effect transistors (OFETs) showed ambipolar responses with carrier mobilities of 10(-3) cm(2)/V·s.